If you have a soft spot for desserts that combine the best of two worlds, you are going to adore this Cheesecake Cookie Cups with Chocolate Chips Recipe. Imagine biting into a warm, golden cookie cup brimming with luscious, creamy cheesecake filling studded with melty chocolate chips—it is simply irresistible. This dessert feels like a comforting hug wrapped in a delicious package, perfect for sharing with friends or savoring as your own special treat. Trust me, once you try these delightful cups, they’ll become a favorite in your recipe collection for good.

Ingredients You’ll Need
Getting the ingredients right is so important for this recipe because each one plays a vital role in the final texture, flavor, and appearance. Luckily, these are staple ingredients you might already have in your kitchen, making it both easy and rewarding to whip up this dessert quickly.
- 1 cup all-purpose flour: Provides the perfect structure for the cookie base to hold the cheesecake filling.
- 1/2 teaspoon baking soda: Helps the cookie dough rise just right for a tender, chewy texture.
- 1/4 teaspoon salt: Balances the sweetness and enhances all the flavors in the cookie.
- 1/2 cup unsalted butter, softened: Adds richness and moisture, essential for that melt-in-your-mouth feel.
- 1/4 cup granulated sugar: Sweetens the cookie dough perfectly and works with butter to create a light texture.
- 1/4 cup packed brown sugar: Brings a subtle caramel flavor and extra softness to the cookie base.
- 1 teaspoon vanilla extract: A little goes a long way, rounding out the sweetness with warm, aromatic notes.
- 1 large egg: Binds ingredients together and helps with the cookie’s tender crumb.
- 1 cup semi-sweet chocolate chips: The star mix-ins that make each bite delightfully gooey and chocolaty.
- 8 oz cream cheese, softened: The creamy heart of the cheesecake layer that’s smooth and tangy.
- 1/4 cup granulated sugar (for the filling): Sweetens the cheesecake filling without overpowering the tang of the cream cheese.
- 1 teaspoon vanilla extract (for the filling): Adds a lovely fragrance and depth to the cheesecake filling.
- 1 large egg (for the filling): Creates that silky texture in the cheesecake filling.
- 1 tablespoon all-purpose flour (for the filling): Stabilizes the cheesecake layer, so it holds up perfectly when sliced or bitten into.
How to Make Cheesecake Cookie Cups with Chocolate Chips Recipe
Step 1: Prepare Your Oven and Muffin Tin
Preheat your oven to 350°F (175°C). Greasing or lining a 12-cup muffin tin with paper liners ensures your cookie cups won’t stick and will come out looking picture-perfect. This setup is key to achieving that adorable cup shape.
Step 2: Mix Your Dry Ingredients
In a medium bowl, whisk together the flour, baking soda, and salt. This evenly distributes the raising agent and salt to guarantee a consistent texture throughout the cookie dough, making sure every bite is just right.
Step 3: Cream the Butter and Sugars
In a large bowl, beat the softened unsalted butter with granulated sugar and brown sugar until light and fluffy. This step is essential because it traps air that gives your cookies a delightful lift and tender crumb.
Step 4: Add Egg and Vanilla
Beat in the egg and vanilla extract until everything is thoroughly combined. These ingredients add moisture and create cohesion in the cookie dough while enhancing flavor.
Step 5: Combine Wet and Dry Ingredients, Fold in Chocolate Chips
Gradually add the dry ingredients to your wet mixture, mixing just until combined—overmixing can make cookies tough. Lastly, fold in the semi-sweet chocolate chips gently so they’re evenly distributed without deflating your batter.
Step 6: Form the Cookie Base in Muffin Cups
Drop a heaping tablespoon of cookie dough into each muffin cup, pressing down slightly to create a sturdy base and a shallow cup to hold the cheesecake filling. This is where the magic of combining cookie and cheesecake truly starts.
Step 7: Prepare the Cheesecake Filling
In a separate bowl, beat the cream cheese, granulated sugar, vanilla extract, egg, and flour until the mixture is smooth and creamy. This smoothness ensures a silky cheesecake layer that will bake beautifully atop the cookie base.
Step 8: Add Cheesecake Filling to Cups
Spoon the cheesecake filling over the cookie dough in each cup, filling almost to the top but leaving a little room so the filling doesn’t spill over while baking. This balance keeps your cups neat and appealing.
Step 9: Bake Until Golden and Set
Bake for 18-22 minutes, or until the cheesecake filling is just set and the cookie edges turn a beautiful golden brown. Timing is vital here to ensure your cheesecake is creamy but fully cooked, and your cookie remains soft yet sturdy.
Step 10: Cooling and Chilling
Allow the cups to cool completely in the muffin tin to keep their shape, then refrigerate for at least an hour before serving. The chilling step lets the cheesecake layer firm up and the flavors meld, making each bite a heavenly experience.
How to Serve Cheesecake Cookie Cups with Chocolate Chips Recipe

Garnishes
Adding a simple garnish can elevate your cheesecake cookie cups to show-stopping status. Consider a dusting of powdered sugar, a drizzle of melted chocolate, or a sprinkling of crushed nuts to add texture and visual appeal. Fresh berries or a small mint leaf on top provide a pop of color and freshness that contrasts beautifully with the rich dessert.
Side Dishes
While these cups are heavenly on their own, pairing them with a scoop of vanilla ice cream, a dollop of whipped cream, or even a drizzle of caramel sauce can turn your dessert into a decadent celebration. A cup of rich coffee or a glass of cold milk also complements the flavors perfectly, making it an unforgettable treat for your guests or family.
Creative Ways to Present
Presentation can be fun and playful with these cookie cups. Serve them on a decorative platter lined with parchment paper, or place each cup in a small colorful cupcake liner to brighten up any dessert table. For parties, consider adding tiny flags or tags with fun notes or ingredients. You can also assemble a dessert board with various toppings and let everyone customize their cheesecake cookie cups.
Make Ahead and Storage
Storing Leftovers
Store any leftover Cheesecake Cookie Cups with Chocolate Chips Recipe in an airtight container in the refrigerator. They will stay fresh for up to 3 days. Keeping them chilled keeps the cheesecake firm and the cookie base deliciously tender.
Freezing
If you want to prepare these cookie cups in advance, you can freeze them. Wrap each cup individually in plastic wrap and place them in an airtight container or freezer bag. They can be frozen for up to 2 months and thawed overnight in the fridge before serving, making them a perfect make-ahead bite for spontaneous dessert cravings.
Reheating
To enjoy your cheesecake cookie cups warm, gently reheat them in the oven at 300°F (150°C) for about 5-8 minutes. Avoid microwaving as it can affect the texture of the cheesecake and soften the cookie too much. This method revives their fresh-baked charm beautifully.
FAQs
Can I use different chocolate chips in this Cheesecake Cookie Cups with Chocolate Chips Recipe?
Absolutely! You can swap semi-sweet chocolate chips for milk chocolate, dark chocolate, or even white chocolate chips depending on your preference. Each will bring a slightly different sweetness and flavor profile, but all work wonderfully with the cheesecake filling.
Is it necessary to refrigerate the cookie cups before serving?
Yes, refrigerating for at least an hour is highly recommended. This chilling step helps the cheesecake filling set firmly so the cups hold their shape and have that perfect creamy texture when you bite into them.
Can I make these cheesecake cookie cups gluten-free?
Definitely! You can substitute the all-purpose flour for a gluten-free flour blend that measures cup-for-cup. Just make sure your baking powder or soda is gluten-free, too. The texture might be slightly different, but still delicious.
How long do these cookie cups last once baked?
When stored properly in the fridge, cheesecake cookie cups will stay fresh and tasty for about 3 days. Beyond that, the texture and flavor might start to degrade, so enjoy them sooner rather than later!
Can I double the recipe to make more servings?
For sure! Simply double all ingredients and bake in two muffin tins or in batches. Just keep an eye on the baking time as ovens vary, but it should remain close to the original 18-22 minutes.
Final Thoughts
I can’t recommend the Cheesecake Cookie Cups with Chocolate Chips Recipe enough—they’re a delightful blend of chewy, creamy, and chocolaty that satisfy every dessert craving. Easy to make and even easier to love, these dessert cups are sure to become your go-to when you want to impress or simply treat yourself. So grab your ingredients and start baking—your taste buds will thank you!
Print
Cheesecake Cookie Cups with Chocolate Chips Recipe
- Prep Time: 15 minutes
- Cook Time: 22 minutes
- Total Time: 1 hour 37 minutes
- Yield: 12 servings
- Category: Dessert
- Method: Baking
- Cuisine: American
Description
These Cheesecake Cookie Cups with Chocolate Chips combine the rich, creamy texture of cheesecake with the delightful chewiness of chocolate chip cookie dough, all baked together in convenient individual servings. Perfectly portioned and easy to make, they are a delightful treat for dessert or special occasions.
Ingredients
Cookie Dough
- 1 cup all-purpose flour
- 1/2 teaspoon baking soda
- 1/4 teaspoon salt
- 1/2 cup unsalted butter, softened
- 1/4 cup granulated sugar
- 1/4 cup packed brown sugar
- 1 teaspoon vanilla extract
- 1 large egg
- 1 cup semi-sweet chocolate chips
Cheesecake Filling
- 8 oz cream cheese, softened
- 1/4 cup granulated sugar
- 1 teaspoon vanilla extract
- 1 large egg
- 1 tablespoon all-purpose flour
Instructions
- Preheat and prepare muffin tin: Preheat your oven to 350°F (175°C) and grease or line a 12-cup muffin tin with paper liners to prevent sticking.
- Mix dry ingredients for dough: In a medium bowl, whisk together the all-purpose flour, baking soda, and salt. Set aside for later.
- Cream butter and sugars: In a large bowl, use an electric mixer to cream unsalted butter, granulated sugar, and brown sugar until the mixture is light and fluffy, which usually takes a few minutes.
- Add egg and vanilla: Beat the large egg and vanilla extract into the creamed butter and sugars until fully incorporated.
- Combine wet and dry dough ingredients: Gradually add the dry flour mixture to the wet cream mixture, mixing just until combined to avoid overworking the dough. Then gently fold in the semi-sweet chocolate chips evenly.
- Form cookie dough base: Drop a heaping tablespoon of cookie dough into each muffin cup and press it gently down to create a flat cookie base for the cheesecake filling.
- Prepare cheesecake filling: In a separate bowl, beat softened cream cheese, granulated sugar, vanilla extract, egg, and all-purpose flour together until the mixture is smooth and creamy.
- Fill muffin cups: Spoon the cheesecake filling onto the cookie dough bases in each muffin cup, filling almost to the top without overflowing.
- Bake: Place the muffin tin in the oven and bake for 18-22 minutes, or until the cheesecake filling is set and cookie edges turn golden brown.
- Cool and chill: Allow the cheesecake cookie cups to cool completely in the tin before removing them. Then refrigerate for at least one hour to fully set the cheesecake layer before serving.
Notes
- Ensure cream cheese is softened at room temperature for smooth mixing.
- Do not overmix the cookie dough to keep it tender and soft.
- Use paper liners for easy removal and cleanup.
- Refrigerate cheesecake cookie cups thoroughly to allow firm texture before serving.
- These can be stored covered in the refrigerator for up to 3 days.

